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Mathematical Genomics
Apr 13, 2009 to Apr 15, 2009

Organizer(s)

David Galas (Institute for Systems Biology), Richard Olshen (Co-chair) (Stanford University), Rick Woychik (The Jackson Laboratory), Nancy Zhang (Co-chair) (Stanford University)
The goal of the conference is to bring individuals from genetics and the mathematical sciences into closer contact so that they might share objectives and skills needed to advance both areas, and especially their intersection. After introductions, the conference will begin with a panel discussion on mathematical genomics by experts from different fields that make contact with the general subject of mathematical genomics. David Galas will chair the panel; there are commitments to participate from Peter Bickel, Wing Wong, and Rick Woychik. The conference will continue Monday evening with a session on new approaches to genomic profiling. Tuesday morning will be devoted to studies of human disease, particularly cancer and autism. That afternoon’s talks and discussion concern genomic analysis. Wednesday morning will be a session on model organisms because understanding them may bear upon understanding human disease. Leroy Hood has agreed to give a closing lecture Wednesday afternoon.

Plans are for wide-ranging discussion. It will include particular new technologies for sequencing, human polymorphisms that predispose to autism, The Cancer Genome Atlas, Markov processes and their application to understanding copy number variation in malignant cells, and applications of combinatorics and pattern recognition to genetic problems.

This conference is supported by a generous grant from Dr. J. Simons.





Accomodations:

A block of rooms has been reserved at the Rose Garden Inn. Reservations may be made by calling 1-800-992-9005 OR directly on their website. Click on Corporate at the bottom of the screen and when prompted enter code MATH (this code is not case sensitive). By using this code a new calendar will appear and will show MSRI rate on all room types available.
The cut-off date for reservations is March 27, 2009.

A block of rooms has been reserved at the Hotel Durant. Please mention the workshop name and reference the following code when making reservations via phone, fax or e-mail: 0904MSRISY. The cut-off date for reservations is March 12, 2009.
Schedule
Monday, April 13, 2009
2:30PM - 4:00PM Wing Wong, Peter Bickel, Rick Woychik, David Galas *Discussion Panel* [Video available]
5:15PM - 6:00PM Rafael Irizarry Detecting Differentially Methylated Regions with Microarray Data [Video available]
7:00PM - 7:45PM Sandrine Dudoit Statistical Inference in mRNA-Seq [Video available]
Tuesday, April 14, 2009
10:15AM - 11:00AM Lauren Weiss SNPs and Copy Number Variants in Autism – What are we Missing? [Video available]
11:15AM - 12:00PM Nancy Zhang Characterization of Allele-specific Copy Number in Tumor Genomes [Video available]
12:00PM - 12:45PM Haiyan Huang A Bayesian Probabilistic Approach Toward Transforming Public Microarray Repositories Into Disease Diagnosis Databases [Video available]
2:45PM - 3:30PM Xianghong Zhou Integrated Approaches to Mapping Genome to Phenome [Video available]
4:00PM - 4:45PM Lior Pachter L.Pachter Talk [Video available]
4:45PM - 5:30PM James Bentley Brown In vitro data and the analysis of ChIP-seq and ChIP-chip experiments [Video available]
Wednesday, April 15, 2009
9:30AM - 10:15AM Abby Dernburg "Chromosome organization and dynamics in C. elegans." [Video available]
10:15AM - 11:00AM Greg Carter Maximizing Information from Genetic Data [Video available]
11:30AM - 12:15PM Joseph Nadeau 'Genetics and systems medicine when n=1' [Video available]
2:30PM - 3:30PM Leroy Hood L. Hood Talk [Video available]


Questions about this workshop should be sent either by email to
or by regular mail to:
Mathematical Genomics
Mathematical Sciences Research Institute
17 Gauss Way, Berkeley, CA
94720-5070.
USA

The Institute is committed to the principles of Equal Opportunity and Affirmative Action.



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