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Schedule

Mathematical Systems Biology of Cancer II October 24, 2007 - October 26, 2007

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Oct 24, 2007
Wednesday
08:45 AM - 09:00 AM
  Welcome by MSRI
08:45 AM - 05:00 PM
  TUTORIALS
09:00 AM - 09:45 AM
  Introduction to Exon Arrays
Elizabeth Purdom (University of California, Berkeley)
09:45 AM - 10:30 AM
  Monte Carlo Methods For Learning Biological Networks
Sach Mukherjee
11:00 AM - 12:00 PM
  Issues in Modeling Signal Transduction and Other Reaction Networks with ODEs
William Chen
12:00 PM - 01:30 AM
  Lunch
01:30 PM - 02:15 PM
  The Applications of Differential Equation Based Nonlinear Regression in Pharmacokinetics and Metabolomics
Li Lang
02:15 PM - 03:00 PM
  Searching for differentially expressed pathways in microarray data
Serban Nacu
03:00 PM - 03:30 PM
  Tea break
03:30 PM - 04:15 PM
  Analyzing Structural Rearrangements in Cancer Genomes
Ben Raphael
04:15 PM - 05:00 PM
  New in situ data for the analysis of interactions between cancer and the immune system in auxillary lymph nodes
Susan Holmes (Stanford University)
05:00 PM - 06:00 PM
  Reception
Oct 25, 2007
Thursday
09:00 AM - 05:00 PM
  INVITED SPEAKER PRESENTATIONS
09:00 AM - 10:00 AM
  Analysis of the regulators of caspase activation by death receptor ligands
Suzanne Gaudet
10:00 AM - 10:30 AM
  Coffee break
10:30 AM - 11:30 AM
  Genomic Classification of Lung Cancer for Clinical Use
Neil Hayes
11:30 AM - 12:30 PM
  A Bistable Rb/E2F Switch: A Model for Mammalian Cell Cycle Entry
Lingchong You
12:30 PM - 01:30 PM
  Lunch
01:30 PM - 02:30 PM
  Inference engines for primary cell signaling using patient samples
Garry Nolan
02:30 PM - 03:30 PM
  Stochastic models of yeast kinetochore-microtubule interactions
Khuloud Jaqaman
03:30 PM - 04:00 PM
  Tea break
04:00 PM - 05:00 PM
  Modeling viral infections **MSRI Biology Colloquium Lecture Series**
Alan Perelson
Oct 26, 2007
Friday
09:00 AM - 05:00 PM
  DATA ANALYSIS PRESENTATIONS
09:00 AM - 09:45 AM
  Introduction to ICBP data
09:45 AM - 10:30 AM
  A Comparison of Affymetrix Gene Expression Arrays
Mark Robinson
10:30 AM - 11:00 AM
  Coffee break
11:00 AM - 11:45 AM
  Detection of Alternative Splicing with Exon Arrays
Elizabeth Purdom (University of California, Berkeley)
12:00 PM - 01:30 PM
  Lunch
01:30 PM - 02:15 PM
  The Analysis of Differential Methylation Hybridization Data
Dustin Potter
02:15 PM - 03:00 PM
  Cell Lines, Microarrays, Drugs and Disease: Trying to Predict Response to Chemotherapy
Keith Baggerly
03:00 PM - 03:30 PM
  Tea break
03:30 PM - 04:15 PM
  Derivation and Consequences of Rearranged Cancer Genomes
Ben Raphael
04:15 PM - 05:00 PM
  Segmentation of Array CGH Data with Application to Allele Specific Copy Number, Clonality, and Copy Number Variation
Adam Olshen