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Mathematical Systems Biology of Cancer II October 24, 2007 - October 26, 2007

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Oct 24, 2007 Wednesday	08:45 AM - 09:00 AM   Welcome by MSRI Location -- Video -- Abstracts/Handouts -- View Schedule 08:45 AM - 05:00 PM   TUTORIALS Location -- Video -- Abstracts/Handouts -- View Schedule 09:00 AM - 09:45 AM   Introduction to Exon Arrays Elizabeth Purdom (University of California, Berkeley) Location -- Video -- Abstracts/Handouts -- View Schedule 09:45 AM - 10:30 AM   Monte Carlo Methods For Learning Biological Networks Sach Mukherjee Location -- Video -- Abstracts/Handouts -- View Schedule 11:00 AM - 12:00 PM   Issues in Modeling Signal Transduction and Other Reaction Networks with ODEs William Chen Location -- Video -- Abstracts/Handouts -- View Schedule 12:00 PM - 01:30 AM   Lunch Location -- Video -- Abstracts/Handouts -- View Schedule 01:30 PM - 02:15 PM   The Applications of Differential Equation Based Nonlinear Regression in Pharmacokinetics and Metabolomics Li Lang Location -- Video -- Abstracts/Handouts -- View Schedule 02:15 PM - 03:00 PM   Searching for differentially expressed pathways in microarray data Serban Nacu Location -- Video -- Abstracts/Handouts -- View Schedule 03:00 PM - 03:30 PM   Tea break Location -- Video -- Abstracts/Handouts -- View Schedule 03:30 PM - 04:15 PM   Analyzing Structural Rearrangements in Cancer Genomes Ben Raphael Location -- Video -- Abstracts/Handouts -- View Schedule 04:15 PM - 05:00 PM   New in situ data for the analysis of interactions between cancer and the immune system in auxillary lymph nodes Susan Holmes (Stanford University) Location -- Video -- Abstracts/Handouts -- View Schedule 05:00 PM - 06:00 PM   Reception Location -- Video -- Abstracts/Handouts -- View Schedule
Oct 25, 2007 Thursday	09:00 AM - 05:00 PM   INVITED SPEAKER PRESENTATIONS Location -- Video -- Abstracts/Handouts -- View Schedule 09:00 AM - 10:00 AM   Analysis of the regulators of caspase activation by death receptor ligands Suzanne Gaudet Location -- Video -- Abstracts/Handouts -- View Schedule 10:00 AM - 10:30 AM   Coffee break Location -- Video -- Abstracts/Handouts -- View Schedule 10:30 AM - 11:30 AM   Genomic Classification of Lung Cancer for Clinical Use Neil Hayes Location -- Video -- Abstracts/Handouts -- View Schedule 11:30 AM - 12:30 PM   A Bistable Rb/E2F Switch: A Model for Mammalian Cell Cycle Entry Lingchong You Location -- Video -- Abstracts/Handouts -- View Schedule 12:30 PM - 01:30 PM   Lunch Location -- Video -- Abstracts/Handouts -- View Schedule 01:30 PM - 02:30 PM   Inference engines for primary cell signaling using patient samples Garry Nolan Location -- Video -- Abstracts/Handouts -- View Schedule 02:30 PM - 03:30 PM   Stochastic models of yeast kinetochore-microtubule interactions Khuloud Jaqaman Location -- Video -- Abstracts/Handouts -- View Schedule 03:30 PM - 04:00 PM   Tea break Location -- Video -- Abstracts/Handouts -- View Schedule 04:00 PM - 05:00 PM   Modeling viral infections **MSRI Biology Colloquium Lecture Series** Alan Perelson Location -- Video -- Abstracts/Handouts -- View Schedule
Oct 26, 2007 Friday	09:00 AM - 05:00 PM   DATA ANALYSIS PRESENTATIONS Location -- Video -- Abstracts/Handouts -- View Schedule 09:00 AM - 09:45 AM   Introduction to ICBP data Location -- Video -- Abstracts/Handouts -- View Schedule 09:45 AM - 10:30 AM   A Comparison of Affymetrix Gene Expression Arrays Mark Robinson Location -- Video -- Abstracts/Handouts -- View Schedule 10:30 AM - 11:00 AM   Coffee break Location -- Video -- Abstracts/Handouts -- View Schedule 11:00 AM - 11:45 AM   Detection of Alternative Splicing with Exon Arrays Elizabeth Purdom (University of California, Berkeley) Location -- Video -- Abstracts/Handouts -- View Schedule 12:00 PM - 01:30 PM   Lunch Location -- Video -- Abstracts/Handouts -- View Schedule 01:30 PM - 02:15 PM   The Analysis of Differential Methylation Hybridization Data Dustin Potter Location -- Video -- Abstracts/Handouts -- View Schedule 02:15 PM - 03:00 PM   Cell Lines, Microarrays, Drugs and Disease: Trying to Predict Response to Chemotherapy Keith Baggerly Location -- Video -- Abstracts/Handouts -- View Schedule 03:00 PM - 03:30 PM   Tea break Location -- Video -- Abstracts/Handouts -- View Schedule 03:30 PM - 04:15 PM   Derivation and Consequences of Rearranged Cancer Genomes Ben Raphael Location -- Video -- Abstracts/Handouts -- View Schedule 04:15 PM - 05:00 PM   Segmentation of Array CGH Data with Application to Allele Specific Copy Number, Clonality, and Copy Number Variation Adam Olshen Location -- Video -- Abstracts/Handouts -- View Schedule